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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26679814_26680534_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26679814 - 26680534
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTCTTATA
Flanking Amino Acid:
SDKYNIPMSSEIAPNYEFYK
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
70
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.8
0.87
0.6
84.7
23.2
Minor 5ss
35.6
-1.6
3.5
48.7
47.8
Minor BPS
57.1
0.22
1.9
75.73
35.3

Associated Gene:

Gene:
FOXP2
Ensembl Gene ID:
ENSAPLG00000012306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012842
26651490 - 26708533
57044