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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26685208_26689002_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26685208 - 26689002
Intron Length:
3795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTGC
5'SS Class:
major
3'SS Sequence:
TCTTTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCTTAACA
Flanking Amino Acid:
MQVVQQLEIQLSKERERLQA
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
39.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
84.1
0.77
0.8
80.8
29.7
Minor 5ss
43
-0.8
2.4
53.7
43.4
Minor BPS
85.3
1.1
1
86.69
32.1

Associated Gene:

Gene:
FOXP2
Ensembl Gene ID:
ENSAPLG00000012306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012842
26651490 - 26708533
57044