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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26700304_26706656_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26700304 - 26706656
Intron Length:
6353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTCTCTTTCATT
Flanking Amino Acid:
SALPVQSLPQAGLSPAEIQQ
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.8
40.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85
0.79
0.7
80.3
31.4
Minor 5ss
43.3
-0.7
2.9
55.6
48.6
Minor BPS
60.1
0.4
1.8
74.65
43.4

Associated Gene:

Gene:
FOXP2
Ensembl Gene ID:
ENSAPLG00000012306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012842
26651490 - 26708533
57044