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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26706826_26708323_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26706826 - 26708323
Intron Length:
1498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCTAC
U12 Branch Point Sequence:
TTTCCCCCATCT
Flanking Amino Acid:
QQHPGKQAKEQQQQQQQLAA
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
49.5
-0
1.4
50.2
44.9
Major PPT
81.2
0.7
0.8
76.8
31.4
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
49.5
0.04
2.1
79.09
42.4

Associated Gene:

Gene:
FOXP2
Ensembl Gene ID:
ENSAPLG00000012306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012842
26651490 - 26708533
57044