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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26775181_26843871_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26775181 - 26843871
Intron Length:
68691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGAACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTCTTTTCACT
Flanking Amino Acid:
VELLHLQQQQALQAARQLLL
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.8
0.56
0.9
71.3
39.5
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
64.5
0.54
1.7
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045789
26706970 - 27017576
310607
ENSAPLT00000044816
26706970 - 26856195
149226