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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2689612_2690454_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2689612 - 2690454
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GTACTATTAACC
Flanking Amino Acid:
FWIYDIVRNSWSCVYKNDQA
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
70.7
41.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
80
0.67
0.9
73.6
40.4
Minor 5ss
33.7
-1.9
2.9
38.4
41.6
Minor BPS
58.5
0.25
1.6
66.92
37.7

Associated Gene:

Gene:
MKLN1
Ensembl Gene ID:
ENSAPLG00000003364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022860
2683448 - 2747145
63698
ENSAPLT00000017816
2674640 - 2747145
72506
ENSAPLT00000003506
2674575 - 2747145
72571