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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2690603_2699591_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2690603 - 2699591
Intron Length:
8989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TAGTGTGTAACT
Flanking Amino Acid:
SDGTKKDSGMVPMTGFTQRA
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
90.1
0.9
0.8
92.3
26.6
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
48.8
-0
2.4
72.38
44.9

Associated Gene:

Gene:
MKLN1
Ensembl Gene ID:
ENSAPLG00000003364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022860
2683448 - 2747145
63698
ENSAPLT00000017816
2674640 - 2747145
72506
ENSAPLT00000003506
2674575 - 2747145
72571