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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26948635_27017463_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
26948635 - 27017463
Intron Length:
68829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
ATAGCTGTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
86.8
0.83
0.7
84.4
30.5
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
47.7
-0
2.1
68.14
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045789
26706970 - 27017576
310607