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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2701962_2703755_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2701962 - 2703755
Intron Length:
1794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCGGC
5'SS Class:
major
3'SS Sequence:
CTTGTTCCTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ACTGGCTTAAAA
Flanking Amino Acid:
GGPKLVFDHQMCMDSEKHMI
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
63.6
42.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
70.7
0.47
1
68.3
37.8
Minor 5ss
32.1
-2
3.2
42
44.8
Minor BPS
50.8
0.02
2
62.6
43.7

Associated Gene:

Gene:
MKLN1
Ensembl Gene ID:
ENSAPLG00000003364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022860
2683448 - 2747145
63698
ENSAPLT00000017816
2674640 - 2747145
72506
ENSAPLT00000003506
2674575 - 2747145
72571