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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27107195_27126035_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27107195 - 27126035
Intron Length:
18841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CACTTCCCCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
CTGACATTAAAC
Flanking Amino Acid:
MSEHLALRNSASSEEE
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71.5
33.2
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
60.4
0.24
1
60.3
29.5
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
51.7
0.03
1.8
61.76
43

Associated Gene:

Gene:
PPP1R3A
Ensembl Gene ID:
ENSAPLG00000029187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040496
27099363 - 27153041
53679