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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27126696_27147909_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27126696 - 27147909
Intron Length:
21214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTGTTTAACA
Flanking Amino Acid:
LKGCLKTTPSSKEEILATSD
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.4
0.77
0.9
81
35.4
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
76.2
0.82
1.7
86.93
31.8

Associated Gene:

Gene:
PPP1R3A
Ensembl Gene ID:
ENSAPLG00000029187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040496
27099363 - 27153041
53679