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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27147969_27148078_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27147969 - 27148078
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACAC
5'SS Class:
major
3'SS Sequence:
GTTAACTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTTGTTAACT
Flanking Amino Acid:
DDVWNNSRTSDKSIPEIVYS
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.48
1.1
59.5
39.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
75.1
0.57
0.9
70.4
40.8
Minor 5ss
30.5
-2.2
3.3
41.8
45
Minor BPS
75
0.86
2
95.32
31.5

Associated Gene:

Gene:
PPP1R3A
Ensembl Gene ID:
ENSAPLG00000029187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040496
27099363 - 27153041
53679