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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2719076_2726836_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2719076 - 2726836
Intron Length:
7761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
GHQMVIDVQTETVYLFGGWD
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
78.2
37.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
76.4
0.59
0.9
78.7
33.5
Minor 5ss
32.5
-2
2.8
43.2
43.8
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
MKLN1
Ensembl Gene ID:
ENSAPLG00000003364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022860
2683448 - 2747145
63698
ENSAPLT00000017816
2674640 - 2747145
72506
ENSAPLT00000003506
2674575 - 2747145
72571