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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2728174_2735753_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2728174 - 2735753
Intron Length:
7580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATGTTTTATACA
Flanking Amino Acid:
CEELIEKAVNDGLFNQYISQ
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
47.4
-0.2
1.9
60.2
40.7

Associated Gene:

Gene:
MKLN1
Ensembl Gene ID:
ENSAPLG00000003364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003506
2674575 - 2747145
72571
ENSAPLT00000022860
2683448 - 2747145
63698
ENSAPLT00000017816
2674640 - 2747145
72506