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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27310568_27311067_R

Intron Information:

Intron Rank:
130358
Intron Class:
major
Intron Phase:
Intron Coordinates:
27310568 - 27311067
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTTCCTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
88.9
0.88
0.6
84.3
23.7
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
59.6
0.3
2.1
79.54
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017385
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037788
27309820 - 27311814
1995