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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27398561_27410279_R

Intron Information:

Intron Rank:
148901
Intron Class:
major
Intron Phase:
Intron Coordinates:
27398561 - 27410279
Intron Length:
11719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.5
32.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.7
0.78
0.7
82
28.2
Minor 5ss
30.1
-2.3
2.6
28.4
36
Minor BPS
59.2
0.37
2
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025612
27398396 - 27415069
16674