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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2745500_2746876_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2745500 - 2746876
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTAACCTTATTT
Flanking Amino Acid:
NEENMTDLLSSGLKNDYNKE
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
75.5
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.7
0.87
0.6
84.5
23.5
Minor 5ss
33.7
-1.9
3.2
48.4
47.1
Minor BPS
61.1
0.43
1.6
74.71
41.8

Associated Gene:

Gene:
MKLN1
Ensembl Gene ID:
ENSAPLG00000003364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022860
2683448 - 2747145
63698
ENSAPLT00000017816
2674640 - 2747145
72506
ENSAPLT00000003506
2674575 - 2747145
72571