About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27537829_27537953_R

Intron Information:

Intron Rank:
129170
Intron Class:
major
Intron Phase:
Intron Coordinates:
27537829 - 27537953
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTCAC
5'SS Class:
major
3'SS Sequence:
TTTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTCATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
61.7
38.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.2
0.9
0.6
89.7
25.5
Minor 5ss
32
-2.1
3
45.5
42.6
Minor BPS
68.2
0.66
1.6
81.53
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016700
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026458
27537398 - 27538496
1099