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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27538035_27538196_R

Intron Information:

Intron Rank:
129171
Intron Class:
major
Intron Phase:
Intron Coordinates:
27538035 - 27538196
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGTGAGTG
5'SS Class:
major
3'SS Sequence:
TTTCTGTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGAAAC
U12 Branch Point Sequence:
TAGGAAGAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1
58.6
40.6
Major BPS
46.3
-0.2
1
48.7
32
Major PPT
81.6
0.71
0.8
76.8
31.8
Minor 5ss
34.2
-1.8
3.4
38.1
46.9
Minor BPS
35.2
-1.1
2.3
45.26
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016700
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026458
27537398 - 27538496
1099