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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27554208_27565631_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27554208 - 27565631
Intron Length:
11424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCGCG
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTGTATCTAACA
Flanking Amino Acid:
HRRLRKKYREVGDFDKIWRE
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.6
44.5
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
85.8
0.81
0.7
85.6
29.2
Minor 5ss
42.2
-0.9
3.2
56.7
47.6
Minor BPS
57.8
0.24
1.9
72.99
38.8

Associated Gene:

Gene:
BMT2
Ensembl Gene ID:
ENSAPLG00000012673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013197
27553865 - 27587272
33408