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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27565774_27575547_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27565774 - 27575547
Intron Length:
9774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTGGTGAAAT
Flanking Amino Acid:
EGEGRIEWCCSVCREYFQNG
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
75.1
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
43.2
-0.8
3.3
64.9
46.4
Minor BPS
44.6
-0.3
2.5
69.82
46.7

Associated Gene:

Gene:
BMT2
Ensembl Gene ID:
ENSAPLG00000012673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013197
27553865 - 27587272
33408