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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27575722_27580595_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27575722 - 27580595
Intron Length:
4874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TGCTGCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TAAAACTGAATT
Flanking Amino Acid:
GLTNHEAIPEELLHSLGKIR
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.6
33.2
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
71.5
0.49
0.9
69.2
37
Minor 5ss
47.4
-0.3
2.8
63.8
41.6
Minor BPS
52.6
0.16
1.7
69.52
40.5

Associated Gene:

Gene:
BMT2
Ensembl Gene ID:
ENSAPLG00000012673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013197
27553865 - 27587272
33408