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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27589704_27589779_R

Intron Information:

Intron Rank:
132000
Intron Class:
major
Intron Phase:
Intron Coordinates:
27589704 - 27589779
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
TGCTGTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CCTTCTAAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.3
76.9
33.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.4
0.55
0.9
68.1
37.6
Minor 5ss
34.2
-1.8
2.9
39.7
39.2
Minor BPS
45
-0.3
2.2
63.67
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018254
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026068
27589654 - 27590958
1305