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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27589836_27590243_R

Intron Information:

Intron Rank:
132001
Intron Class:
major
Intron Phase:
Intron Coordinates:
27589836 - 27590243
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TTCTTTAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
GTTTCTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
74.4
0.55
0.9
74.7
33.8
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
88.8
1.3
0.9
96.8
27.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018254
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026068
27589654 - 27590958
1305