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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27595408_27595519_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
27595408 - 27595519
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTCTTTTTT
5'SS Class:
weak_major
3'SS Sequence:
CCTGTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAACAT
U12 Branch Point Sequence:
ATTCCCACAAAC
Flanking Amino Acid:
LAVLIIDLRMNCLISDPLLD
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.13
1.3
67
39
Major BPS
55.8
0.15
1.3
63.4
42.8
Major PPT
82.9
0.74
0.8
80.3
31.7
Minor 5ss
49.4
-0
2.5
67.5
37.3
Minor BPS
48.8
-0.1
1.9
65.78
38.6

Associated Gene:

Gene:
TMEM168
Ensembl Gene ID:
ENSAPLG00000018062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044598
27594818 - 27613419
18602