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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27595956_27607638_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27595956 - 27607638
Intron Length:
11683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
CTCTCTATATAT
Flanking Amino Acid:
TAVLGAVSWQPTNGIFMSAF
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
80.3
34.3
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
40.4
-1.1
3.1
56.9
47.4
Minor BPS
46.8
-0.1
2
65.56
45.1

Associated Gene:

Gene:
TMEM168
Ensembl Gene ID:
ENSAPLG00000018062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044598
27594818 - 27613419
18602