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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27607782_27608826_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27607782 - 27608826
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTTA
5'SS Class:
major
3'SS Sequence:
TTCTTCTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TTGATCATAACT
Flanking Amino Acid:
YAVVIPTNFCSPDGQPTLLP
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.8
35.5
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
86
0.81
0.6
85.4
22
Minor 5ss
45.8
-0.4
3.2
63.9
47.7
Minor BPS
63.9
0.52
1.7
81.43
39.9

Associated Gene:

Gene:
TMEM168
Ensembl Gene ID:
ENSAPLG00000018062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044598
27594818 - 27613419
18602