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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27666380_27667720_R

Intron Information:

Intron Rank:
148541
Intron Class:
major
Intron Phase:
Intron Coordinates:
27666380 - 27667720
Intron Length:
1341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGATAT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTTTCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.8
34.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
83.9
0.76
0.8
82
28.5
Minor 5ss
41.8
-0.9
3.2
62
43.4
Minor BPS
66.6
0.52
1.6
79.19
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027321
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034297
27662375 - 27671913
9539