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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27667927_27671879_R

Intron Information:

Intron Rank:
148542
Intron Class:
major
Intron Phase:
Intron Coordinates:
27667927 - 27671879
Intron Length:
3953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
TGTTTTTGACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTTTTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74
36.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.3
0.57
1
70.3
44.5
Minor 5ss
40
-1.1
3.2
48.8
47.3
Minor BPS
71.9
0.67
1.1
76.51
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027321
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048074
27667590 - 27678655
11066
ENSAPLT00000034297
27662375 - 27671913
9539