Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27672061_27673181_R

Intron Information:

Intron Rank:

148537

Intron Class:

major

Intron Phase:

Intron Coordinates:

27672061 - 27673181

Intron Length:

1121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTGAGTCCA

5'SS Class:

major

3'SS Sequence:

CATGTCCCAGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

ATGTTATTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.2

0.48

1.1

62.4

37.5

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

65.8

0.36

59.9

36.4

Minor 5ss

31.6

-2.1

2.9

39.6

39.8

Minor BPS

50.9

0.11

1.8

70.68

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027321

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032781

27671934 - 27678655

6722