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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27687486_27689694_F

Intron Information:

Intron Rank:
139889
Intron Class:
major
Intron Phase:
Intron Coordinates:
27687486 - 27689694
Intron Length:
2209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
AGTTCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
78.2
37.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
85.9
0.81
0.8
80.7
36.7
Minor 5ss
35.2
-1.7
3.2
51.1
45.2
Minor BPS
65.3
0.48
1.7
74.34
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025203
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047445
27687343 - 27690216
2874