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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27697858_27699640_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27697858 - 27699640
Intron Length:
1783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTTTTTCAAG
Flanking Amino Acid:
ALVSFVIFLIIQTRNKLDQI
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.1
0.74
0.9
82.8
32.6
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
49
-0.2
1.9
59.29
43.1

Associated Gene:

Gene:
LSMEM1
Ensembl Gene ID:
ENSAPLG00000012853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013378
27697434 - 27705692
8259