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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27699782_27702905_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27699782 - 27702905
Intron Length:
3124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTATG
5'SS Class:
major
3'SS Sequence:
TATCTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
ATCACTTTATCA
Flanking Amino Acid:
ACPDESQHALDEEYESTGDA
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.7
41.5
Major BPS
79
0.72
1
80.3
31.7
Major PPT
80.4
0.68
0.9
73.7
35.2
Minor 5ss
38.4
-1.3
3
47.6
42.5
Minor BPS
57.6
0.24
1.6
66.15
40.5

Associated Gene:

Gene:
LSMEM1
Ensembl Gene ID:
ENSAPLG00000012853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013378
27697434 - 27705692
8259