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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27712936_27713545_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27712936 - 27713545
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTAT
5'SS Class:
major
3'SS Sequence:
TTTTATCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
KTMKISRFERHLYNSAAFKA
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
74.9
38.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.1
0.81
0.7
81.8
29.8
Minor 5ss
40
-1.1
3.2
48.8
47.3
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
IFRD1
Ensembl Gene ID:
ENSAPLG00000012860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032359
27712846 - 27721992
9147
ENSAPLT00000027975
27712846 - 27729350
16505
ENSAPLT00000022505
27712846 - 27721992
9147
ENSAPLT00000013417
27712283 - 27722537
10255