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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27712936_27714628_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27712936 - 27714628
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
LGSGMQYHLQHLYNSAAFKA
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.1
0.81
0.7
81.8
29.8
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
IFRD1
Ensembl Gene ID:
ENSAPLG00000012860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026183
27712846 - 27722537
9692