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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27713642_27714628_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27713642 - 27714628
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TACTGTTTGATA
Flanking Amino Acid:
LGSGMQYHLQSNDFLRNVFE
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
74
0.54
0.9
73
37.4
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
52.2
0.06
1.8
62.14
38.8

Associated Gene:

Gene:
IFRD1
Ensembl Gene ID:
ENSAPLG00000012860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032359
27712846 - 27721992
9147
ENSAPLT00000027975
27712846 - 27729350
16505
ENSAPLT00000022505
27712846 - 27721992
9147
ENSAPLT00000013417
27712283 - 27722537
10255