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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27714758_27715603_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27714758 - 27715603
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATCTTT
5'SS Class:
major
3'SS Sequence:
TAATTTTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTCCTTTAATT
Flanking Amino Acid:
VFRDVLRAVEERDFPTETVK
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
76.8
34.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.5
0.62
1
72.6
41.9
Minor 5ss
44.4
-0.6
3.1
64.6
46.7
Minor BPS
83.1
1.12
1
93.31
27.9

Associated Gene:

Gene:
IFRD1
Ensembl Gene ID:
ENSAPLG00000012860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027975
27712846 - 27729350
16505
ENSAPLT00000026183
27712846 - 27722537
9692
ENSAPLT00000022505
27712846 - 27721992
9147
ENSAPLT00000013417
27712283 - 27722537
10255
ENSAPLT00000032359
27712846 - 27721992
9147