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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27715739_27717086_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27715739 - 27717086
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTTGGATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
CTTTTTTGGATT
Flanking Amino Acid:
LFELARETDADFFYEDMELL
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
72.7
0.51
1
74.6
40
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
57.5
0.32
1.4
74.31
37.3

Associated Gene:

Gene:
IFRD1
Ensembl Gene ID:
ENSAPLG00000012860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027975
27712846 - 27729350
16505
ENSAPLT00000026183
27712846 - 27722537
9692
ENSAPLT00000022505
27712846 - 27721992
9147
ENSAPLT00000013417
27712283 - 27722537
10255
ENSAPLT00000032359
27712846 - 27721992
9147