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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27717196_27717288_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27717196 - 27717288
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
AAATATTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TGTTCTTGAAAT
Flanking Amino Acid:
PMNEVKKKIEMHLHKLPSML
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
83.4
28
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
63
0.29
0.9
59.7
41.4
Minor 5ss
37.3
-1.4
2.9
50.4
39.3
Minor BPS
67.6
0.63
1.5
83.29
37.1

Associated Gene:

Gene:
IFRD1
Ensembl Gene ID:
ENSAPLG00000012860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013417
27712283 - 27722537
10255
ENSAPLT00000032359
27712846 - 27721992
9147
ENSAPLT00000027975
27712846 - 27729350
16505
ENSAPLT00000026183
27712846 - 27722537
9692
ENSAPLT00000022505
27712846 - 27721992
9147