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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27717468_27717556_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27717468 - 27717556
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGATC
5'SS Class:
major
3'SS Sequence:
TACCTCTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ACTTCCGTAACC
Flanking Amino Acid:
CCFIVTDDITELYSTMECLE
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
73.3
37.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75
0.56
0.9
72.9
37.1
Minor 5ss
31.9
-2.1
3.3
43.8
43.8
Minor BPS
66.3
0.49
2
76.53
39.9

Associated Gene:

Gene:
IFRD1
Ensembl Gene ID:
ENSAPLG00000012860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027975
27712846 - 27729350
16505
ENSAPLT00000026183
27712846 - 27722537
9692
ENSAPLT00000013417
27712283 - 27722537
10255
ENSAPLT00000032359
27712846 - 27721992
9147