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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27719285_27719703_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27719285 - 27719703
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
KGFIDLTLDKSAKTRQAALE
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
100
1.24
0.5
100
0
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
IFRD1
Ensembl Gene ID:
ENSAPLG00000012860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026183
27712846 - 27722537
9692
ENSAPLT00000022505
27712846 - 27721992
9147
ENSAPLT00000013417
27712283 - 27722537
10255
ENSAPLT00000032359
27712846 - 27721992
9147
ENSAPLT00000027975
27712846 - 27729350
16505