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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27719786_27720471_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27719786 - 27720471
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATGGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTGTCTAAATC
Flanking Amino Acid:
FSDPASFTEDGPEVDEEATQ
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.5
32.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
61
0.25
1.1
55.2
44.4
Minor 5ss
42.3
-0.8
2.9
56.2
43.3
Minor BPS
55.2
0.14
1.8
66
40.4

Associated Gene:

Gene:
IFRD1
Ensembl Gene ID:
ENSAPLG00000012860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027975
27712846 - 27729350
16505
ENSAPLT00000026183
27712846 - 27722537
9692
ENSAPLT00000022505
27712846 - 27721992
9147
ENSAPLT00000013417
27712283 - 27722537
10255
ENSAPLT00000032359
27712846 - 27721992
9147