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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27720577_27729340_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27720577 - 27729340
Intron Length:
8764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTTTCTTTAAG
Flanking Amino Acid:
MERGGQPRNVQPF
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.3
32.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.7
0.58
1
79.7
32
Minor 5ss
33.5
-1.9
3.1
44.4
43.7
Minor BPS
56.1
0.05
1.9
63.92
43.8

Associated Gene:

Gene:
IFRD1
Ensembl Gene ID:
ENSAPLG00000012860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027975
27712846 - 27729350
16505