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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27763320_27764369_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27763320 - 27764369
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGACG
5'SS Class:
major
3'SS Sequence:
TTGTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTCTGTTAAAA
Flanking Amino Acid:
LPARSTWDQPQYYFPTYEND
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
61.1
43.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.7
0.8
0.8
77.7
36.7
Minor 5ss
34.8
-1.7
3.2
46.8
42.3
Minor BPS
51
0.03
2.1
68.25
37.7

Associated Gene:

Gene:
ZNF277
Ensembl Gene ID:
ENSAPLG00000013207
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013793
27763130 - 27802873
39744