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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27764545_27765304_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27764545 - 27765304
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATTCCTCAAGT
Flanking Amino Acid:
FDFLKIKSEHGLNFYQQVKL
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
73
0.52
0.8
65.7
36
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
68.1
0.65
1.9
85.78
40.1

Associated Gene:

Gene:
ZNF277
Ensembl Gene ID:
ENSAPLG00000013207
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013793
27763130 - 27802873
39744