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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27778193_27779559_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27778193 - 27779559
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTTGAAT
Flanking Amino Acid:
MFCDQEFTGNRSVLLNHMAR
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78.6
0.64
0.8
73.9
36.1
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
64.6
0.54
1.4
79.1
37.4

Associated Gene:

Gene:
ZNF277
Ensembl Gene ID:
ENSAPLG00000013207
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013793
27763130 - 27802873
39744