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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27792140_27794195_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27792140 - 27794195
Intron Length:
2056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
AATCTCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AATCTCTTAACA
Flanking Amino Acid:
VIRTNSEAPLEEQDNYFLLC
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
72
0.49
1
66.5
38.6
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
74.5
0.76
1.1
76.55
33.4

Associated Gene:

Gene:
ZNF277
Ensembl Gene ID:
ENSAPLG00000013207
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013793
27763130 - 27802873
39744