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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27906140_27908003_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27906140 - 27908003
Intron Length:
1864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTGAA
5'SS Class:
major
3'SS Sequence:
CTGCATATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GCTTTTGTAATA
Flanking Amino Acid:
HLKNACVKNKGQFEMVIPTE
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
68.5
38.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
72.7
0.51
1
65.2
39.7
Minor 5ss
30.2
-2.3
3.3
30.7
43.3
Minor BPS
50.3
0.01
2
62.57
38.8

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760