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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27912087_27916032_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27912087 - 27916032
Intron Length:
3946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCCTCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCCTCATGC
Flanking Amino Acid:
HITARLDWGNEQLGLDLVPR
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73
33.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.4
0.73
0.8
77.8
29.8
Minor 5ss
30.9
-2.2
2.6
29.7
36.6
Minor BPS
55.7
0.16
2.1
74.6
42.2

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760