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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27937908_27939766_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27937908 - 27939766
Intron Length:
1859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
TATGCATCAAAT
Flanking Amino Acid:
IYITVHIIRIGRMGAGEKKN
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
87.1
30
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
82.8
0.74
1
80.6
37
Minor 5ss
37.9
-1.4
3.1
50.4
46.1
Minor BPS
49.2
0.02
2
72.5
43.5

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760